Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc58Leucine rich repeat containing 58b. (352 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
  0.899
cdo1
Cysteine dioxygenase.
    
   0.878
LOC113036014
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.835
CUL5
Cullin 5; Belongs to the cullin family.
    
  0.835
RPS27A
Ribosomal protein S27a.
    
  0.818
rnf7
Ring finger protein 7.
    
  0.818
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.818
arih2
RBR-type E3 ubiquitin transferase.
    
 
 0.783
LOC113018914
NEDD8 ubiquitin like modifier.
    
  0.775
ENSACLP00000029713
Ubiquitin-like domain-containing protein.
    
  0.775
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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