Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113014938Si:dkey-206d17.12. (644 aa)    
Predicted Functional Partners:
tank
TRAF family member-associated NFKB activator.
   
 
 0.806
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
   0.730
rc3h1
Ring finger and CCCH-type domains 1b.
      
 0.653
LOC113034374
AT rich interactive domain 5A (MRF1-like).
   
  
 0.638
tm2d3
TM2 domain containing 3.
      
 0.611
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 
 0.597
LOC113013036
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
  0.596
optn
Optineurin.
    
  0.549
ENSACLP00000009605
Ubiquitin B.
    
   0.529
LOC113030103
Uncharacterized protein.
    
   0.529
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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