STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc2CCHC-type domain-containing protein. (1081 aa)    
Predicted Functional Partners:
bclaf3
Uncharacterized protein.
      
 0.817
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.746
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.713
mtrex
Mtr4 exosome RNA helicase.
   
 0.679
ENSACLP00000025607
Coiled-coil domain containing 9.
   
  
 0.667
ENSACLP00000020610
FGGY carbohydrate kinase domain containing.
    
 
 0.657
ENSACLP00000011646
Zgc:162339.
      
 0.655
LOC113020365
F5/8 type C domain-containing protein.
     
 0.613
ENSACLP00000011805
F-box protein 16.
    
 
 0.611
cep85
Centrosomal protein 85.
      
 0.610
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.