Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACLP00000006680Poly-U binding splicing factor b. (513 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.971
ENSACLP00000033349
Splicing factor 3b, subunit 3.
    
 0.951
sf3b1
Splicing factor 3b, subunit 1.
   
 0.936
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
   
 0.935
sf3a3
Splicing factor 3a, subunit 3.
   
 0.921
LOC113020192
Serine/arginine repetitive matrix 2.
   
 
 0.900
ENSACLP00000011218
Splicing factor 1.
   
 0.893
ENSACLP00000009848
Far upstream element (FUSE) binding protein 1.
   
 
 0.892
smndc1
Survival motor neuron domain containing 1.
   
 0.885
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.876
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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