STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006680Poly-U binding splicing factor b. (513 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.904
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
   
 0.870
sf3b1
Splicing factor 3b, subunit 1.
   
 0.839
ENSACLP00000033349
Splicing factor 3b, subunit 3.
    
 0.838
ENSACLP00000024094
RRM domain-containing protein.
  
  
 
0.820
sf3b2
Splicing factor 3b, subunit 2.
   
 0.818
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.813
KHSRP
KH-type splicing regulatory protein.
   
 
 0.803
ENSACLP00000009848
Far upstream element (FUSE) binding protein 1.
   
 
 0.803
ENSACLP00000030352
Uncharacterized protein.
   
 
 0.803
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.