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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006709Histone H2B; Belongs to the histone H2B family. (134 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.922
LOC113030109
Lysine (K)-specific demethylase 6B, b.
    
 0.858
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.858
ENSACLP00000028690
Lysine (K)-specific demethylase 6B, a.
    
 0.858
LOC113015778
Lysine (K)-specific demethylase 6A, like.
    
 0.858
LOC113035099
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
   
 0.854
LOC113030349
H2A histone family, member Y; Belongs to the histone H2A family.
   
 0.854
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.848
ENSACLP00000000543
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.843
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 0.841
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.