Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006719Yip1 domain family, member 3. (347 aa)    
Predicted Functional Partners:
yipf4
Protein YIPF.
    
 
 0.988
LOC113021377
Protein YIPF.
   
  
 0.905
yipf6
Protein YIPF.
   
 
 0.897
yipf5
Protein YIPF.
    
 
 0.888
yipf1
Protein YIPF.
   
  
 0.838
ENSACLP00000000024
Selenoprotein S.
    
 
 0.804
ENSACLP00000028680
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
   0.771
tmed2
Transmembrane p24 trafficking protein 2.
    
 
 0.740
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
      
 0.721
LOC113028009
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.691
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.