Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006723Uncharacterized protein. (935 aa)    
Predicted Functional Partners:
lrfn5
Leucine rich repeat and fibronectin type III domain containing 5a.
   
 0.653
LOC113006909
Leucine rich repeat and fibronectin type III domain containing 5b.
   
 0.538
TAFA1
TAFA chemokine like family member 1.
      
 0.528
ino80d
INO80 complex subunit Da.
      
 0.520
TMEM19
Transmembrane protein 19.
      
 0.518
ENSACLP00000032652
Ankyrin repeat and sterile alpha motif domain containing 1B.
   
 
 0.518
LOC113032048
Transmembrane protein 216.
      
 0.517
ENSACLP00000031269
Scavenger receptor class F, member 1.
    
 
 0.507
slc30a5
Solute carrier family 30 member 5.
   
  
 0.506
ENSACLP00000021666
RNA-binding region (RNP1, RRM) containing 3.
      
 0.504
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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