Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gatad2aGATA zinc finger domain containing 2Ab. (667 aa)    
Predicted Functional Partners:
gatad2b
GATA zinc finger domain containing 2B.
  
  
0.940
LOC113011262
GATA zinc finger domain containing 2A.
  
  
 
0.939
mta3
Metastasis associated 1 family, member 3.
   
 0.930
mta1
Metastasis associated 1.
   
 0.930
mta2
Metastasis associated 1 family, member 2.
   
 0.930
ENSACLP00000023458
Chromodomain helicase DNA binding protein 4a.
   
 0.926
ENSACLP00000036203
Uncharacterized protein.
   
 0.926
ENSACLP00000004606
Chromodomain helicase DNA binding protein 5.
   
 0.922
ENSACLP00000013570
Chromodomain helicase DNA binding protein 3.
   
 0.922
LOC113027513
Retinoblastoma binding protein 4, like.
    
 0.900
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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