STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113023509Uncharacterized protein. (536 aa)    
Predicted Functional Partners:
ENSACLP00000023325
Coiled-coil domain containing 114.
  
 0.892
ENSACLP00000036302
Leucine-rich repeats and guanylate kinase domain containing.
   
  0.859
ENSACLP00000016170
Armadillo repeat containing 4.
    
 
 0.835
ttc25
Tetratricopeptide repeat domain 25.
  
 
 0.823
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.800
ENSACLP00000029276
Uncharacterized protein.
    
 0.767
LOC113025776
Ras homolog family member F.
  
 0.738
LOC113012818
Uncharacterized protein.
  
 0.729
rnd1
Rho family GTPase 1b.
  
 0.729
LOC113012962
Uncharacterized protein.
  
 0.729
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.