STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysmd1LysM, putative peptidoglycan-binding, domain containing 1. (237 aa)    
Predicted Functional Partners:
LOC113021370
Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.
    
   0.851
ca10
Carbonic anhydrase Xa; Belongs to the alpha-carbonic anhydrase family.
    
   0.851
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3.
      
 0.670
LOC113026828
LysM, putative peptidoglycan-binding, domain containing 4.
      
 0.588
tulp3
Tubby-like protein; Belongs to the TUB family.
    
   0.545
ENSACLP00000033435
TUB like protein 1b; Belongs to the TUB family.
    
   0.545
tub
Tubby-like protein; Belongs to the TUB family.
    
   0.545
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
      
 0.543
ENSACLP00000002524
Mannosidase, beta A, lysosomal.
      
 0.536
ENSACLP00000040421
Zinc finger CCCH-type containing 15.
      
 0.535
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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