LOC113009239 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113009239

Uncharacterized protein. (658 aa)

Predicted Functional Partners:

LOC113021093

0.832

ube2i

0.832

kctd2

0.832

LOC113008023

0.598

LOC113022754

0.589

ak9

0.587

YTHDC2

0.574

LOC113011132

0.568

ENSACLP00000014277

0.568

TCEA3

0.568

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000014277	LOC113009239	ENSACLP00000014277	ENSACLP00000006794	Uncharacterized protein.	Uncharacterized protein.	0.568
LOC113008023	LOC113009239	ENSACLP00000027401	ENSACLP00000006794	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.598
LOC113008023	LOC113021093	ENSACLP00000027401	ENSACLP00000016884	BRCA1 associated RING domain 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.831
LOC113008023	YTHDC2	ENSACLP00000027401	ENSACLP00000028162	BRCA1 associated RING domain 1.	YTH domain containing 2.	0.679
LOC113008023	kctd2	ENSACLP00000027401	ENSACLP00000034082	BRCA1 associated RING domain 1.	Potassium channel tetramerization domain containing 2.	0.831
LOC113008023	ube2i	ENSACLP00000027401	ENSACLP00000018082	BRCA1 associated RING domain 1.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.831
LOC113009239	ENSACLP00000014277	ENSACLP00000006794	ENSACLP00000014277	Uncharacterized protein.	Uncharacterized protein.	0.568
LOC113009239	LOC113008023	ENSACLP00000006794	ENSACLP00000027401	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.598
LOC113009239	LOC113011132	ENSACLP00000006794	ENSACLP00000011709	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.568
LOC113009239	LOC113021093	ENSACLP00000006794	ENSACLP00000016884	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.832
LOC113009239	LOC113022754	ENSACLP00000006794	ENSACLP00000016423	Uncharacterized protein.	Tankyrase_bdg_C domain-containing protein.	0.589
LOC113009239	TCEA3	ENSACLP00000006794	ENSACLP00000018586	Uncharacterized protein.	Transcription elongation factor A3.	0.568
LOC113009239	YTHDC2	ENSACLP00000006794	ENSACLP00000028162	Uncharacterized protein.	YTH domain containing 2.	0.574
LOC113009239	ak9	ENSACLP00000006794	ENSACLP00000024078	Uncharacterized protein.	Adenylate kinase 9.	0.587
LOC113009239	kctd2	ENSACLP00000006794	ENSACLP00000034082	Uncharacterized protein.	Potassium channel tetramerization domain containing 2.	0.832
LOC113009239	ube2i	ENSACLP00000006794	ENSACLP00000018082	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.832
LOC113011132	LOC113009239	ENSACLP00000011709	ENSACLP00000006794	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.568
LOC113021093	LOC113008023	ENSACLP00000016884	ENSACLP00000027401	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	BRCA1 associated RING domain 1.	0.831
LOC113021093	LOC113009239	ENSACLP00000016884	ENSACLP00000006794	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.832
LOC113021093	ube2i	ENSACLP00000016884	ENSACLP00000018082	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.848