LOC113033473 protein (Astatotilapia calliptera)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC113033473

Uncharacterized protein. (401 aa)

Predicted Functional Partners:

tradd

0.896

ripk1

0.894

LOC113025469

0.881

LOC113012218

0.880

LOC113029411

0.880

fadd

0.878

LOC113008307

0.863

LOC113019091

0.829

ENSACLP00000021866

0.798

fam171a1

0.675

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000021866	LOC113025469	ENSACLP00000021866	ENSACLP00000039900	Allantoicase.	Tumor necrosis factor receptor superfamily, member a.	0.416
ENSACLP00000021866	LOC113033473	ENSACLP00000021866	ENSACLP00000006811	Allantoicase.	Uncharacterized protein.	0.798
LOC113008307	LOC113025469	ENSACLP00000015862	ENSACLP00000039900	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member a.	0.869
LOC113008307	LOC113033473	ENSACLP00000015862	ENSACLP00000006811	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.863
LOC113012218	LOC113025469	ENSACLP00000009023	ENSACLP00000039900	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member a.	0.880
LOC113012218	LOC113029411	ENSACLP00000009023	ENSACLP00000019053	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.872
LOC113012218	LOC113033473	ENSACLP00000009023	ENSACLP00000006811	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.880
LOC113019091	LOC113025469	ENSACLP00000030313	ENSACLP00000039900	TNF superfamily member 10, like; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member a.	0.783
LOC113019091	LOC113033473	ENSACLP00000030313	ENSACLP00000006811	TNF superfamily member 10, like; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.829
LOC113025469	ENSACLP00000021866	ENSACLP00000039900	ENSACLP00000021866	Tumor necrosis factor receptor superfamily, member a.	Allantoicase.	0.416
LOC113025469	LOC113008307	ENSACLP00000039900	ENSACLP00000015862	Tumor necrosis factor receptor superfamily, member a.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.869
LOC113025469	LOC113012218	ENSACLP00000039900	ENSACLP00000009023	Tumor necrosis factor receptor superfamily, member a.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.880
LOC113025469	LOC113019091	ENSACLP00000039900	ENSACLP00000030313	Tumor necrosis factor receptor superfamily, member a.	TNF superfamily member 10, like; Belongs to the tumor necrosis factor family.	0.783
LOC113025469	LOC113029411	ENSACLP00000039900	ENSACLP00000019053	Tumor necrosis factor receptor superfamily, member a.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.880
LOC113025469	LOC113033473	ENSACLP00000039900	ENSACLP00000006811	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.881
LOC113025469	fadd	ENSACLP00000039900	ENSACLP00000000013	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.878
LOC113025469	ripk1	ENSACLP00000039900	ENSACLP00000030354	Tumor necrosis factor receptor superfamily, member a.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.976
LOC113025469	tradd	ENSACLP00000039900	ENSACLP00000006563	Tumor necrosis factor receptor superfamily, member a.	Tnfrsf1a-associated via death domain.	0.952
LOC113029411	LOC113012218	ENSACLP00000019053	ENSACLP00000009023	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.872
LOC113029411	LOC113025469	ENSACLP00000019053	ENSACLP00000039900	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member a.	0.880