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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d22aTBC1 domain family, member 22a. (575 aa)    
Predicted Functional Partners:
ENSACLP00000038524
Mitochondrial ribosomal protein S6.
    
   0.819
mrps35
Mitochondrial ribosomal protein S35.
    
   0.722
mrpl41
Mitochondrial ribosomal protein L41.
   
   0.698
LOC113027054
Mitochondrial ribosomal protein L23.
    
   0.689
ENSACLP00000028949
Mitochondrial ribosomal protein L47.
    
   0.689
dap3
Death associated protein 3.
    
   0.689
mrpl46
Mitochondrial ribosomal protein L46.
    
   0.689
ENSACLP00000032040
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
    
   0.689
ENSACLP00000038160
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
   0.689
ENSACLP00000038298
Mitochondrial ribosomal protein L33.
    
   0.689
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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