Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC113033476Cytochrome b561 family, member A3a. (292 aa)    
Predicted Functional Partners:
CDYL2
Chromodomain Y like 2.
    
   0.720
cdyl
Chromodomain protein, Y-like.
    
   0.720
IPP
Intracisternal A particle-promoted polypeptide.
      
 0.655
pprc1
PPARG related coactivator 1.
      
 0.611
LOC113034181
Transcobalamin II.
      
 0.606
aoc1
Amine oxidase.
    
   0.604
ENSACLP00000033349
Splicing factor 3b, subunit 3.
     
  0.557
ENSACLP00000039767
Cytosolic iron-sulfur assembly component 2B.
      
 0.547
ENSACLP00000015526
Glutaredoxin 3.
      
 0.530
gfm1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
      
 0.529
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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