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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raxRetinal homeobox gene 3. (315 aa)    
Predicted Functional Partners:
LOC113014576
Iroquois homeobox 1b.
    
 
 0.672
LOC113023510
MADS-box domain-containing protein.
    
 0.596
SRF
Serum response factor.
    
 0.596
cplx3
Complexin 3b.
     
 0.546
tpk1
Thiamin pyrophosphokinase 1.
    
  0.544
LOC113034698
LIM domain binding 1a.
    
 0.526
ldb2
LIM domain binding 2a.
    
 0.526
LOC113023769
LIM-domain binding 1b.
    
 0.526
LOC113034379
Folliculogenesis specific bHLH transcription factor.
   
 0.471
zglp1
GATA-type domain-containing protein.
    
 0.441
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.