Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nlgn3Neuroligin 3a. (857 aa)    
Predicted Functional Partners:
nrxn1
Neurexin 1.
    
 0.940
LOC113028267
Neurexin 1.
    
 0.940
ENSACLP00000007945
Uncharacterized protein.
    
 0.934
LOC113037115
Neurexin 3b.
    
 0.934
NRXN2
Neurexin 2.
    
 0.928
LOC113031125
Uncharacterized protein.
    
 0.928
nlgn1
Neuroligin 1.
     
  0.824
ENSACLP00000012620
Neuroligin 4 X-linked a.
     
  0.824
wdr43
WD repeat domain 43.
   
 0.645
LOC113030203
Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.
    
 0.618
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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