STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006917DDE Tnp4 domain-containing protein. (353 aa)    
Predicted Functional Partners:
ntf3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
    
  0.605
LOC113012951
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
  0.605
LOC113020292
NGF domain-containing protein; Belongs to the NGF-beta family.
    
  0.605
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.580
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 0.570
ENSACLP00000034959
Uncharacterized protein.
    
 0.570
ENSACLP00000037698
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
  0.522
LOC113022018
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
     
 0.490
glod4
Glyoxalase domain containing 4.
    
  0.489
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
     
 0.489
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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