ENSACLP00000006942 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000006942

Mitochondrial rRNA methyltransferase 2. (222 aa)

Predicted Functional Partners:

ENSACLP00000036883

0.973

gtpbp4

0.971

nsa2

0.958

noc2l

0.955

wdr6

0.953

wdr74

0.952

rsl24d1

0.950

wdr12

0.949

ebna1bp2

0.943

BOP1

0.935

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	ENSACLP00000006942	ENSACLP00000008725	ENSACLP00000006942	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Mitochondrial rRNA methyltransferase 2.	0.935
BOP1	ENSACLP00000036883	ENSACLP00000008725	ENSACLP00000036883	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP58 ribonucleoprotein homolog (yeast).	0.982
BOP1	ebna1bp2	ENSACLP00000008725	ENSACLP00000001040	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	EBNA1 binding protein 2.	0.996
BOP1	gtpbp4	ENSACLP00000008725	ENSACLP00000039009	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	GTP binding protein 4.	0.991
BOP1	noc2l	ENSACLP00000008725	ENSACLP00000038736	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOC2-like nucleolar associated transcriptional repressor.	0.992
BOP1	nsa2	ENSACLP00000008725	ENSACLP00000040773	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.988
BOP1	rsl24d1	ENSACLP00000008725	ENSACLP00000012105	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L24 domain containing 1.	0.988
BOP1	wdr12	ENSACLP00000008725	ENSACLP00000036936	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
BOP1	wdr74	ENSACLP00000008725	ENSACLP00000017335	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat domain 74.	0.992
ENSACLP00000006942	BOP1	ENSACLP00000006942	ENSACLP00000008725	Mitochondrial rRNA methyltransferase 2.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.935
ENSACLP00000006942	ENSACLP00000036883	ENSACLP00000006942	ENSACLP00000036883	Mitochondrial rRNA methyltransferase 2.	NOP58 ribonucleoprotein homolog (yeast).	0.973
ENSACLP00000006942	ebna1bp2	ENSACLP00000006942	ENSACLP00000001040	Mitochondrial rRNA methyltransferase 2.	EBNA1 binding protein 2.	0.943
ENSACLP00000006942	gtpbp4	ENSACLP00000006942	ENSACLP00000039009	Mitochondrial rRNA methyltransferase 2.	GTP binding protein 4.	0.971
ENSACLP00000006942	noc2l	ENSACLP00000006942	ENSACLP00000038736	Mitochondrial rRNA methyltransferase 2.	NOC2-like nucleolar associated transcriptional repressor.	0.955
ENSACLP00000006942	nsa2	ENSACLP00000006942	ENSACLP00000040773	Mitochondrial rRNA methyltransferase 2.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.958
ENSACLP00000006942	rsl24d1	ENSACLP00000006942	ENSACLP00000012105	Mitochondrial rRNA methyltransferase 2.	Ribosomal L24 domain containing 1.	0.950
ENSACLP00000006942	wdr12	ENSACLP00000006942	ENSACLP00000036936	Mitochondrial rRNA methyltransferase 2.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.949
ENSACLP00000006942	wdr6	ENSACLP00000006942	ENSACLP00000028453	Mitochondrial rRNA methyltransferase 2.	WD repeat domain 6.	0.953
ENSACLP00000006942	wdr74	ENSACLP00000006942	ENSACLP00000017335	Mitochondrial rRNA methyltransferase 2.	WD repeat domain 74.	0.952
ENSACLP00000036883	BOP1	ENSACLP00000036883	ENSACLP00000008725	NOP58 ribonucleoprotein homolog (yeast).	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.982