Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ribc1RIB43A domain with coiled-coils 1. (378 aa)    
Predicted Functional Partners:
c20h1orf194
Uncharacterized protein.
   
 
 0.955
tekt2
Tektin 2 (testicular).
   
 
 0.953
cfap52
Cilia and flagella associated protein 52.
   
 0.945
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
    
 
 0.939
zmynd12
Zinc finger, MYND-type containing 12.
   
 
 0.926
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.925
efhc2
EF-hand domain (C-terminal) containing 2.
   
 
 0.924
ENSACLP00000023325
Coiled-coil domain containing 114.
   
 
 0.924
ENSACLP00000001030
Family with sequence similarity 183 member A.
    
 
 0.922
tekt3
Tektin 3.
   
 
 0.920
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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