Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113021377Protein YIPF. (305 aa)    
Predicted Functional Partners:
yipf6
Protein YIPF.
   
 
 0.985
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
   
  
 0.918
ENSACLP00000006719
Yip1 domain family, member 3.
   
  
 0.905
yipf4
Protein YIPF.
    
 
 0.902
yipf5
Protein YIPF.
   
 
 0.890
ENSACLP00000000024
Selenoprotein S.
    
 
 0.853
LOC113028009
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.781
LOC113020684
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.781
TVP23A
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.781
slc38a7
Solute carrier family 38 member 7.
      
 0.719
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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