parn protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

parn

Poly(A)-specific ribonuclease (deadenylation nuclease). (677 aa)

Predicted Functional Partners:

dis3l2

0.785

dcp2

0.780

exosc5

0.753

exosc6

0.733

exosc7

0.728

exosc3

0.728

dis3

0.728

exosc4

0.728

KHSRP

0.724

ENSACLP00000009848

0.724

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000009848	dcp2	ENSACLP00000009848	ENSACLP00000028217	Far upstream element (FUSE) binding protein 1.	Decapping mRNA 2.	0.602
ENSACLP00000009848	dis3	ENSACLP00000009848	ENSACLP00000026447	Far upstream element (FUSE) binding protein 1.	DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.581
ENSACLP00000009848	dis3l2	ENSACLP00000009848	ENSACLP00000023316	Far upstream element (FUSE) binding protein 1.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.511
ENSACLP00000009848	exosc3	ENSACLP00000009848	ENSACLP00000022567	Far upstream element (FUSE) binding protein 1.	Exosome component 3.	0.567
ENSACLP00000009848	exosc4	ENSACLP00000009848	ENSACLP00000029650	Far upstream element (FUSE) binding protein 1.	Exosome component 4.	0.574
ENSACLP00000009848	exosc5	ENSACLP00000009848	ENSACLP00000030920	Far upstream element (FUSE) binding protein 1.	Exosome component 5.	0.588
ENSACLP00000009848	exosc7	ENSACLP00000009848	ENSACLP00000010863	Far upstream element (FUSE) binding protein 1.	Exosome component 7.	0.575
ENSACLP00000009848	parn	ENSACLP00000009848	ENSACLP00000007013	Far upstream element (FUSE) binding protein 1.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.724
KHSRP	dcp2	ENSACLP00000002263	ENSACLP00000028217	KH-type splicing regulatory protein.	Decapping mRNA 2.	0.602
KHSRP	dis3	ENSACLP00000002263	ENSACLP00000026447	KH-type splicing regulatory protein.	DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.581
KHSRP	dis3l2	ENSACLP00000002263	ENSACLP00000023316	KH-type splicing regulatory protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.511
KHSRP	exosc3	ENSACLP00000002263	ENSACLP00000022567	KH-type splicing regulatory protein.	Exosome component 3.	0.567
KHSRP	exosc4	ENSACLP00000002263	ENSACLP00000029650	KH-type splicing regulatory protein.	Exosome component 4.	0.574
KHSRP	exosc5	ENSACLP00000002263	ENSACLP00000030920	KH-type splicing regulatory protein.	Exosome component 5.	0.588
KHSRP	exosc7	ENSACLP00000002263	ENSACLP00000010863	KH-type splicing regulatory protein.	Exosome component 7.	0.575
KHSRP	parn	ENSACLP00000002263	ENSACLP00000007013	KH-type splicing regulatory protein.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.724
dcp2	ENSACLP00000009848	ENSACLP00000028217	ENSACLP00000009848	Decapping mRNA 2.	Far upstream element (FUSE) binding protein 1.	0.602
dcp2	KHSRP	ENSACLP00000028217	ENSACLP00000002263	Decapping mRNA 2.	KH-type splicing regulatory protein.	0.602
dcp2	dis3	ENSACLP00000028217	ENSACLP00000026447	Decapping mRNA 2.	DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.844
dcp2	dis3l2	ENSACLP00000028217	ENSACLP00000023316	Decapping mRNA 2.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.840