parn protein (Astatotilapia calliptera) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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co-expression

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[Homology]

Score

parn

Poly(A)-specific ribonuclease (deadenylation nuclease). (677 aa)

Predicted Functional Partners:

dhx37

0.975

dcp2

0.973

bysl

0.936

fam207a

0.934

xrn1

0.920

UTP14C

0.882

tsr1

0.837

snupn

0.825

dis3l2

0.817

exosc4

0.787

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UTP14C	bysl	ENSACLP00000009219	ENSACLP00000033117	UTP14C small subunit processome component.	Bystin-like.	0.993
UTP14C	dhx37	ENSACLP00000009219	ENSACLP00000016466	UTP14C small subunit processome component.	DEAH (Asp-Glu-Ala-His) box polypeptide 37.	0.996
UTP14C	dis3l2	ENSACLP00000009219	ENSACLP00000023316	UTP14C small subunit processome component.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.616
UTP14C	exosc4	ENSACLP00000009219	ENSACLP00000029650	UTP14C small subunit processome component.	Exosome component 4.	0.915
UTP14C	fam207a	ENSACLP00000009219	ENSACLP00000013984	UTP14C small subunit processome component.	Family with sequence similarity 207 member A.	0.894
UTP14C	parn	ENSACLP00000009219	ENSACLP00000007013	UTP14C small subunit processome component.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.882
UTP14C	tsr1	ENSACLP00000009219	ENSACLP00000011056	UTP14C small subunit processome component.	TSR1 ribosome maturation factor.	0.968
bysl	UTP14C	ENSACLP00000033117	ENSACLP00000009219	Bystin-like.	UTP14C small subunit processome component.	0.993
bysl	dhx37	ENSACLP00000033117	ENSACLP00000016466	Bystin-like.	DEAH (Asp-Glu-Ala-His) box polypeptide 37.	0.907
bysl	dis3l2	ENSACLP00000033117	ENSACLP00000023316	Bystin-like.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.800
bysl	exosc4	ENSACLP00000033117	ENSACLP00000029650	Bystin-like.	Exosome component 4.	0.941
bysl	fam207a	ENSACLP00000033117	ENSACLP00000013984	Bystin-like.	Family with sequence similarity 207 member A.	0.979
bysl	parn	ENSACLP00000033117	ENSACLP00000007013	Bystin-like.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.936
bysl	tsr1	ENSACLP00000033117	ENSACLP00000011056	Bystin-like.	TSR1 ribosome maturation factor.	0.999
bysl	xrn1	ENSACLP00000033117	ENSACLP00000007127	Bystin-like.	5'-3' exoribonuclease 1.	0.772
dcp2	dis3l2	ENSACLP00000028217	ENSACLP00000023316	Decapping mRNA 2.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.787
dcp2	exosc4	ENSACLP00000028217	ENSACLP00000029650	Decapping mRNA 2.	Exosome component 4.	0.804
dcp2	parn	ENSACLP00000028217	ENSACLP00000007013	Decapping mRNA 2.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.973
dcp2	xrn1	ENSACLP00000028217	ENSACLP00000007127	Decapping mRNA 2.	5'-3' exoribonuclease 1.	0.999
dhx37	UTP14C	ENSACLP00000016466	ENSACLP00000009219	DEAH (Asp-Glu-Ala-His) box polypeptide 37.	UTP14C small subunit processome component.	0.996