STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010544Nectin cell adhesion molecule 4b. (572 aa)    
Predicted Functional Partners:
nectin1
Nectin cell adhesion molecule 1b.
    
0.920
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
 0.892
ENSACLP00000003584
Uncharacterized protein.
    
 0.892
LOC113030735
Nectin cell adhesion molecule 3b.
    
 
0.877
LOC113036070
Uncharacterized protein.
    
 
0.876
LOC113011389
Par-3 family cell polarity regulator alpha, b.
    
  0.849
PARD3
Par-3 family cell polarity regulator.
    
  0.846
LOC113016974
Uncharacterized protein.
  
  
 
0.845
LOC113014137
PVR cell adhesion molecule related 2 like.
    
 
0.845
LOC113032396
Si:ch73-22o12.1.
    
 
0.840
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.