STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113012292Myc target 1b. (183 aa)    
Predicted Functional Partners:
plekhj1
Pleckstrin homology domain containing, family J member 1.
      
 0.721
ENSACLP00000036507
G patch domain containing 1.
      
 0.717
LOC113032793
Zinc finger protein 574.
      
 0.696
ENSACLP00000003702
Golgi glycoprotein 1a.
      
 0.654
LOC113013457
Golgi glycoprotein 1b.
      
 0.654
ENSACLP00000016375
Protein tyrosine phosphatase 4A1.
      
 0.649
LOC113031846
Uncharacterized protein.
      
 0.647
LOC113032791
Zinc finger protein 526.
      
 0.647
ENSACLP00000018204
Protein tyrosine phosphatase receptor type C.
      
 0.611
LOC113033141
Uncharacterized protein.
   
  
 0.535
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.