Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113023985Mucolipin 1a. (589 aa)    
Predicted Functional Partners:
mcoln2
Mucolipin 2.
     
  0.868
MCOLN3
Mucolipin 3.
     
  0.825
LOC113010887
Mucolipin 3a.
     
  0.825
ENSACLP00000024569
Transient receptor potential cation channel, subfamily M, member 2.
     
 0.573
tfeb
Transcription factor EB.
    
 
 0.519
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.517
mrpl30
Mitochondrial ribosomal protein L30.
      
 0.499
LOC113023988
Si:ch211-239f4.1.
      
 0.496
ENSACLP00000028937
A kinase (PRKA) anchor protein 17A.
      
 0.496
pdf
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
    
   0.467
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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