STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007054WD repeat domain 91. (734 aa)    
Predicted Functional Partners:
ENSACLP00000009702
WD repeat domain 81.
   
 
 0.963
becn1
Beclin 1, autophagy related.
    
 
 0.634
ENSACLP00000009201
Coiled-coil domain containing 93.
      
 0.533
vps18
VPS18 core subunit of CORVET and HOPS complexes.
      
 0.508
ccdc22
Coiled-coil domain containing 22.
      
 0.495
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
      
 0.495
ENSACLP00000004083
WD repeat and FYVE domain containing 3.
   
 
 0.494
ENSACLP00000009777
WDFY family member 4.
   
 
 0.494
ENSACLP00000010328
Uncharacterized protein.
   
 
 0.494
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
   
 
 0.494
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.