STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alpk2Uncharacterized protein. (1490 aa)    
Predicted Functional Partners:
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.589
LOC113019337
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.589
LOC113012140
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.589
LOC113017236
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.589
LOC113020312
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.589
ENSACLP00000037389
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.589
gale
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.520
LOC113030540
Transient receptor potential cation channel, subfamily V, member 1; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.514
ENSACLP00000023324
ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.514
LOC113032463
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.514
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.