Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smc1aStructural maintenance of chromosomes protein. (1231 aa)    
Predicted Functional Partners:
rad21
RAD21 cohesin complex component a.
   
 0.998
smc3
Structural maintenance of chromosomes protein.
   
 0.998
LOC113031082
Stromal antigen 2a.
   
 0.992
LOC113008396
Si:ch211-269e2.1.
   
 0.992
ENSACLP00000005893
SCD domain-containing protein.
   
 0.991
stag1
Stromal antigen 1a.
   
 0.991
ENSACLP00000036875
Stromal antigen 2b.
   
 0.991
LOC113029849
REC8 meiotic recombination protein b.
   
 0.987
espl1
Extra spindle pole bodies like 1, separase.
   
 0.986
pds5b
PDS5 cohesin associated factor B.
   
 0.979
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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