STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113018713Uncharacterized protein. (784 aa)    
Predicted Functional Partners:
LOC113021803
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.854
LOC113031828
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.853
pdk1
Protein-serine/threonine kinase.
     
 0.841
bckdk
Protein-serine/threonine kinase.
     
 0.841
pdk3
Protein-serine/threonine kinase.
     
 0.841
pdk4
Protein-serine/threonine kinase.
     
 0.841
LOC113028088
Protein-serine/threonine kinase.
     
 0.841
LOC113015989
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.838
ptk2b
Protein tyrosine kinase 2 beta, b; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.838
LOC113015401
Protein tyrosine kinase 2; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.838
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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