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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcfc2Host cell factor C2. (761 aa)    
Predicted Functional Partners:
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.963
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.919
wdr5
WD repeat domain 5.
   
 0.897
ENSACLP00000020263
Uncharacterized protein.
  
  
 
0.885
ENSACLP00000031188
Uncharacterized protein.
  
  
 
0.878
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 0.876
wsb1
WD repeat and SOCS box containing 1.
   
 0.866
wsb2
WD repeat and SOCS box containing 2.
   
 0.866
uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
 0.861
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 
 0.858
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.