STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007109WD repeat domain 17. (1243 aa)    
Predicted Functional Partners:
brix1
Brix domain containing 2.
   
 
 0.979
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.973
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.965
ENSACLP00000026945
Programmed cell death 11.
   
 
 0.958
gtpbp4
GTP binding protein 4.
   
 
 0.945
ENSACLP00000025762
Ribosomal L1 domain containing 1.
   
 
 0.943
ENSACLP00000036883
NOP58 ribonucleoprotein homolog (yeast).
   
   0.935
wdr75
WD repeat domain 75.
   
 
 0.927
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.922
PES1-2
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.922
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.