STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007120Lysyl oxidase-like 2b. (742 aa)    
Predicted Functional Partners:
LOC113018639
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
   0.791
DHX15
DEAH-box helicase 15.
    
   0.791
ENSACLP00000022919
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
   0.626
mysm1
Myb-like, SWIRM and MPN domains 1.
    
  0.544
ENSACLP00000037094
Im:7152348.
   
 0.520
frem1
Fras1 related extracellular matrix 1a.
    
 0.493
ENSACLP00000030575
Fras1 related extracellular matrix 1b.
    
 0.493
ENSACLP00000001877
Fraser extracellular matrix complex subunit 1.
   
 0.491
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.478
LOC113022284
Macrophage stimulating 1 receptor a.
    
  0.478
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.