STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007128Nischarin. (969 aa)    
Predicted Functional Partners:
nisch
Nischarin.
 
      0.892
LOC113020394
Rho family GTPase 2.
    
  0.595
ENSACLP00000013572
Rho family GTPase 2.
    
  0.595
rnd1
Rho family GTPase 1b.
    
  0.584
rnd3
Rho family GTPase 3a.
    
  0.584
LOC113033143
Uncharacterized protein.
   
 0.484
LOC113025713
Uncharacterized protein.
   
 0.484
LOC113033441
Uncharacterized protein.
    
  0.429
ENSACLP00000011022
Phosphoinositide-3-kinase, regulatory subunit 2 (beta).
    
  0.429
LOC113009053
Phosphoinositide-3-kinase, regulatory subunit 3b (gamma).
    
  0.429
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.