STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013133Aldo_ket_red domain-containing protein. (452 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
   
 0.817
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.808
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.800
ENSACLP00000013336
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.764
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.762
LOC113026534
Potassium voltage-gated channel, shaker-related subfamily, member 1a; Belongs to the potassium channel family.
   
 0.715
ENSACLP00000032731
Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.
    
 0.712
ENSACLP00000039539
Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.
    
 0.712
kcnv1
Potassium voltage-gated channel modifier subfamily V member 1; Belongs to the potassium channel family.
    
 0.703
ENSACLP00000017955
Potassium voltage-gated channel, shaker-related subfamily, member 4; Belongs to the potassium channel family.
   
 0.688
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.