STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113023392E2F_TDP domain-containing protein. (307 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
   
 0.967
rb1
Retinoblastoma 1.
   
 0.944
LOC113025000
Retinoblastoma-like 2 (p130).
   
 0.944
ENSACLP00000025268
Retinoblastoma-like 1 (p107).
   
 0.941
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.855
ENSACLP00000016742
E2F transcription factor 4.
  
  
 
0.835
LOC113025730
Mothers against decapentaplegic homolog.
    
 0.826
LOC113033624
Mothers against decapentaplegic homolog.
    
 0.826
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.759
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.739
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.