ENSACLP00000007158 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000007158

Uncharacterized protein. (218 aa)

Predicted Functional Partners:

LOC113030206

0.745

LOC113027933

0.744

arg2

0.744

LOC113026437

0.644

ENSACLP00000037579

0.644

agmat

0.635

treh

0.617

yipf6

0.587

CLPB

0.531

DYNLL2

0.521

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	ENSACLP00000007158	ENSACLP00000011388	ENSACLP00000007158	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Uncharacterized protein.	0.531
CLPB	ENSACLP00000037579	ENSACLP00000011388	ENSACLP00000037579	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.551
CLPB	LOC113026437	ENSACLP00000011388	ENSACLP00000037549	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.551
CLPB	LOC113030206	ENSACLP00000011388	ENSACLP00000009612	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Malate synthase-like.	0.504
CLPB	treh	ENSACLP00000011388	ENSACLP00000032799	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Trehalase.	0.534
CLPB	yipf6	ENSACLP00000011388	ENSACLP00000012422	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Protein YIPF.	0.497
DYNLL2	ENSACLP00000007158	ENSACLP00000008315	ENSACLP00000007158	Dynein light chain.	Uncharacterized protein.	0.521
DYNLL2	LOC113027933	ENSACLP00000008315	ENSACLP00000025885	Dynein light chain.	Arginase.	0.604
DYNLL2	agmat	ENSACLP00000008315	ENSACLP00000029821	Dynein light chain.	Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.	0.814
DYNLL2	arg2	ENSACLP00000008315	ENSACLP00000040805	Dynein light chain.	Arginase.	0.604
ENSACLP00000007158	CLPB	ENSACLP00000007158	ENSACLP00000011388	Uncharacterized protein.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.531
ENSACLP00000007158	DYNLL2	ENSACLP00000007158	ENSACLP00000008315	Uncharacterized protein.	Dynein light chain.	0.521
ENSACLP00000007158	ENSACLP00000037579	ENSACLP00000007158	ENSACLP00000037579	Uncharacterized protein.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.644
ENSACLP00000007158	LOC113026437	ENSACLP00000007158	ENSACLP00000037549	Uncharacterized protein.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.644
ENSACLP00000007158	LOC113027933	ENSACLP00000007158	ENSACLP00000025885	Uncharacterized protein.	Arginase.	0.744
ENSACLP00000007158	LOC113030206	ENSACLP00000007158	ENSACLP00000009612	Uncharacterized protein.	Malate synthase-like.	0.745
ENSACLP00000007158	agmat	ENSACLP00000007158	ENSACLP00000029821	Uncharacterized protein.	Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.	0.635
ENSACLP00000007158	arg2	ENSACLP00000007158	ENSACLP00000040805	Uncharacterized protein.	Arginase.	0.744
ENSACLP00000007158	treh	ENSACLP00000007158	ENSACLP00000032799	Uncharacterized protein.	Trehalase.	0.617
ENSACLP00000007158	yipf6	ENSACLP00000007158	ENSACLP00000012422	Uncharacterized protein.	Protein YIPF.	0.587