Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep83Centrosomal protein 83. (749 aa)    
Predicted Functional Partners:
sclt1
Sodium channel and clathrin linker 1.
   
 0.925
cep89
Centrosomal protein 89.
     
 0.864
cep19
Centrosomal protein 19.
      
 0.859
fbf1
Uncharacterized protein.
    
 0.829
hcfc2
Host cell factor C2.
     
  0.824
ENSACLP00000031188
Uncharacterized protein.
     
  0.824
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
 0.799
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.791
ENSACLP00000038083
ANK_REP_REGION domain-containing protein.
   
 0.790
ENSACLP00000020263
Uncharacterized protein.
     
  0.789
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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