Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC113035244Centrin, EF-hand protein, 2. (174 aa)    
Predicted Functional Partners:
ENSACLP00000027375
Xeroderma pigmentosum, complementation group C.
    
 0.968
sfi1
SFI1 centrin binding protein.
    
 0.965
cetn3
Centrin 3.
  
 
0.960
poc5
POC5 centriolar protein homolog (Chlamydomonas).
    
 
 0.945
ercc3
Excision repair cross-complementation group 3.
    
 0.922
ccdc40
Coiled-coil domain containing 40.
    
 0.889
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.887
xpa
Xeroderma pigmentosum, complementation group A.
    
 0.886
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
 
 0.878
ccnh
Cyclin H; Belongs to the cyclin family.
    
 0.864
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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