Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007205Uncharacterized protein. (145 aa)    
Predicted Functional Partners:
LOC113007418
RAN binding protein 2.
   
 0.773
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.569
LOC113036155
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.547
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.547
LOC113033890
Uncharacterized protein.
    
 0.547
zfand4
Zinc finger, AN1-type domain 4.
    
 0.537
ENSACLP00000022593
DPH-type MB domain-containing protein.
    
 
 0.523
rangap1
RAN GTPase activating protein 1a.
   
 0.479
ENSACLP00000028094
Ran GTPase activating protein 1b.
   
 0.479
LOC113008023
BRCA1 associated RING domain 1.
    
 0.473
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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