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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf166Ring finger protein 166. (245 aa)    
Predicted Functional Partners:
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.659
KLHL28
Kelch like family member 28.
    
 
 0.580
zbtb39
Zinc finger and BTB domain containing 39.
    
 0.579
LOC113021294
Zinc finger protein 653.
    
 0.568
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
    
 
 0.553
LOC113020740
Coronin; Belongs to the WD repeat coronin family.
      
 0.537
uba3
Ubiquitin-like modifier activating enzyme 3.
     
 0.534
zc3hc1
Zinc finger, C3HC-type containing 1.
      
 0.533
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.528
znf276
Zinc finger protein 276.
    
 0.510
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.