Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xrcc4Uncharacterized protein. (362 aa)    
Predicted Functional Partners:
lig4
DNA ligase.
    
 0.975
LOC113025194
X-ray repair complementing defective repair in Chinese hamster cells 4.
  
  
 
0.944
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.922
xrcc5
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.901
aptx
Aprataxin.
    
 
 0.901
ENSACLP00000003992
Uncharacterized protein.
    
 
 0.890
nhej1
Nonhomologous end-joining factor 1.
    
 0.867
paxx
Uncharacterized protein.
    
 0.866
pnkp
Polynucleotide kinase 3'-phosphatase.
    
 
 0.799
rec114
REC114 meiotic recombination protein.
    
 
 0.799
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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