Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTF3C1General transcription factor IIIC subunit 1. (2218 aa)    
Predicted Functional Partners:
gtf3c2
General transcription factor IIIC, polypeptide 2, beta.
   
 0.999
gtf3c3
General transcription factor IIIC, polypeptide 3.
   
 0.999
gtf3c4
General transcription factor IIIC, polypeptide 4.
   
 0.999
gtf3c5
General transcription factor IIIC, polypeptide 5.
   
 0.999
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
   0.973
LOC113025474
Uncharacterized protein.
    
 0.967
LOC113012693
BRF1 RNA polymerase III transcription initiation factor subunit.
   
 
 0.934
LOC113037338
BRF1 RNA polymerase III transcription initiation factor subunit b.
   
 
 0.934
LOC113006820
Zinc finger protein 512.
   
 0.927
znf512b
Zinc finger protein 512B.
   
 0.927
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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