taf2 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

taf2

TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1213 aa)

Predicted Functional Partners:

taf7l

0.999

taf13

0.999

taf1

0.999

ENSACLP00000021146

0.999

taf8

0.999

taf10

0.999

LOC113030141

0.999

ENSACLP00000041154

0.999

taf3

0.998

gtf2a2

0.996

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000021146	ENSACLP00000041154	ENSACLP00000021146	ENSACLP00000041154	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000021146	LOC113030141	ENSACLP00000021146	ENSACLP00000039232	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000021146	gtf2a2	ENSACLP00000021146	ENSACLP00000037151	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.990
ENSACLP00000021146	taf1	ENSACLP00000021146	ENSACLP00000019004	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.998
ENSACLP00000021146	taf10	ENSACLP00000021146	ENSACLP00000033377	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
ENSACLP00000021146	taf13	ENSACLP00000021146	ENSACLP00000010915	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSACLP00000021146	taf2	ENSACLP00000021146	ENSACLP00000007274	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000021146	taf3	ENSACLP00000021146	ENSACLP00000004565	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.999
ENSACLP00000021146	taf7l	ENSACLP00000021146	ENSACLP00000000751	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
ENSACLP00000021146	taf8	ENSACLP00000021146	ENSACLP00000025527	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000041154	ENSACLP00000021146	ENSACLP00000041154	ENSACLP00000021146	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000041154	LOC113030141	ENSACLP00000041154	ENSACLP00000039232	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000041154	gtf2a2	ENSACLP00000041154	ENSACLP00000037151	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.996
ENSACLP00000041154	taf1	ENSACLP00000041154	ENSACLP00000019004	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
ENSACLP00000041154	taf10	ENSACLP00000041154	ENSACLP00000033377	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
ENSACLP00000041154	taf13	ENSACLP00000041154	ENSACLP00000010915	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSACLP00000041154	taf2	ENSACLP00000041154	ENSACLP00000007274	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000041154	taf3	ENSACLP00000041154	ENSACLP00000004565	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.999
ENSACLP00000041154	taf7l	ENSACLP00000041154	ENSACLP00000000751	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000041154	taf8	ENSACLP00000041154	ENSACLP00000025527	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999