Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
    
 0.999
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 0.998
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
    
 0.998
cd2bp2
CD2 (cytoplasmic tail) binding protein 2.
   
 0.991
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 0.989
snrpg
Small nuclear ribonucleoprotein G.
   
 0.983
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
   
 0.981
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.976
lsm2
Smx5.
   
 0.971
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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