Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACLP00000007342Zinc and ring finger 2a. (115 aa)    
Predicted Functional Partners:
gpatch3
G patch domain containing 3.
      
 0.660
eaf1
ELL associated factor 1.
      
 0.655
rspry1
Ring finger and SPRY domain containing 1.
      
 0.655
ENSACLP00000029276
Uncharacterized protein.
      
 0.655
snx20
Sorting nexin 20.
      
 0.655
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.636
LOC113023562
Neuralized E3 ubiquitin protein ligase 1Aa.
      
 0.636
LOC113034880
Uncharacterized protein.
      
 0.636
arl2bp
ADP-ribosylation factor-like 2 binding protein.
      
 0.551
plekha8
Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8.
      
 0.543
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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