STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lztfl1Leucine zipper transcription factor-like 1. (298 aa)    
Predicted Functional Partners:
bbs2
Bardet-Biedl syndrome 2 protein homolog.
   
 0.974
bbs9
Bardet-Biedl syndrome 9.
    
 0.970
ENSACLP00000019213
Bardet-Biedl syndrome 7.
    
 0.964
ENSACLP00000019941
Bardet-Biedl syndrome 4.
  
 0.954
ttc8
Tetratricopeptide repeat domain 8.
  
 0.954
bbs1
Bardet-Biedl syndrome 1.
   
 0.949
bbs5
Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.
   
 0.872
klhl41
Kelch-like family member 41a.
   
 0.802
LOC113010519
Kelch-like family member 40a.
   
 0.802
LOC113016133
BTB domain-containing protein.
   
 0.802
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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