STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCL11BBAF chromatin remodeling complex subunit BCL11B. (848 aa)    
Predicted Functional Partners:
actl6a
Actin-like 6A; Belongs to the actin family.
    
 0.763
ENSACLP00000000383
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a.
    
  0.687
SMARCA2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.
    
  0.687
ENSACLP00000012731
Uncharacterized protein.
    
  0.687
ENSACLP00000000830
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.
    
 0.684
smarcc1
Uncharacterized protein.
    
 0.684
LOC113021359
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
     
 0.684
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
     
 0.684
LOC113014160
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.
    
 0.684
LOC113015408
AT rich interactive domain 1Ab (SWI-like).
    
  0.658
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.