Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbm42RNA binding motif protein 42. (402 aa)    
Predicted Functional Partners:
haus6
HAUS6_N domain-containing protein.
   
 0.990
ENSACLP00000018554
HAUS augmin-like complex, subunit 3.
   
 0.986
haus8
Uncharacterized protein.
    
 0.985
haus7
Uncharacterized protein.
    
 0.978
ENSACLP00000003169
HAUS augmin-like complex, subunit 1.
    
 0.978
haus2
HAUS augmin like complex subunit 2.
    
 0.971
haus4
HAUS augmin-like complex, subunit 4.
    
 0.949
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.938
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
    
 0.938
LOC113025582
Heterogeneous nuclear ribonucleoprotein K, like.
    
 
 0.933
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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