Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yipf4Protein YIPF. (237 aa)    
Predicted Functional Partners:
ENSACLP00000006719
Yip1 domain family, member 3.
    
 
 0.988
yipf1
Protein YIPF.
    
 
 0.935
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
 
 0.904
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
   
 
 0.904
LOC113021377
Protein YIPF.
    
 
 0.902
tmed10
Transmembrane p24 trafficking protein 10.
   
 
 0.759
rabac1
PRA1 family protein.
   
 
 0.722
maea
Macrophage erythroblast attacher.
   
 
 0.715
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.695
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.688
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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