STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007398Matrin-type domain-containing protein. (4608 aa)    
Predicted Functional Partners:
SENP6
SUMO specific peptidase 6.
   
   0.680
ENSACLP00000020708
Nipped-B protein.
   
  0.674
ENSACLP00000028272
Nipped-B protein.
   
  0.674
ENSACLP00000034796
Translocase of outer mitochondrial membrane 20.
   
 0.670
ENSACLP00000020732
Uncharacterized protein.
   
  0.640
LOC113031008
Zgc:163098.
   
    0.617
ENSACLP00000040888
U2 snRNP-associated SURP domain containing.
   
    0.617
LOC113022754
Tankyrase_bdg_C domain-containing protein.
   
  0.612
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.606
ripk4
Receptor-interacting serine-threonine kinase 4.
   
  0.591
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.