STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ncanNeurocan b. (1358 aa)    
Predicted Functional Partners:
ENSACLP00000004661
Brevican.
   
 0.851
LOC113015316
Uncharacterized protein.
   
 0.851
LOC113008807
Protein tyrosine phosphatase receptor type Z1b.
   
 
 0.821
LOC113026289
Protein tyrosine phosphatase receptor type Z1a.
   
 
 0.821
LOC113030681
LRRNT domain-containing protein.
   
 
 0.768
omg
Oligodendrocyte myelin glycoprotein b.
   
 
 0.768
LYPD6
LY6/PLAUR domain containing 6.
    
 0.710
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.668
efcc1
EF-hand and coiled-coil domain containing 1.
      
 0.662
tnn
Tenascin N.
    
 0.647
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.